An Interactive Visualization Tool for Nipype Medical Image Computing Pipelines

نویسندگان

  • Ramesh Sridharan
  • Adrian V. Dalca
  • Polina Golland
چکیده

We present an interactive tool for visualization of medical imaging pipelines that are built with Nipype, a freely available tool for building pipelines programatically. Our tool enables researchers to interact with their pipelines, visualize the pipeline structure, and view their intermediate and final results. We also provide a video and live demonstration of our tool for a simple brain image registration pipeline.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Parameter-Space Exploration for Computed Tomography Image Analysis Algorithms

We present a tool which supports CT specialists in exploring the parameter and result space of volume segmentation pipelines. In a preprocessing step, the user samples the parameter space of a number of pipelines to be analysed. Our sampling tool supports arbitrary pipeliness that can be parametrized via the command line. The user can then explore the space of possible results of the sampled pi...

متن کامل

Visualization and Analysis of Large Medical Image Collections Using Pipelines

Medical image analysis often requires developing elaborate algorithms that are implemented as computational pipelines. A growing number of large medical imaging studies necessitate development of robust and flexible pipelines. In this thesis, we present contributions of two kinds: (1) an open source framework for building pipelines to analyze large scale medical imaging data that addresses thes...

متن کامل

Nipype: A Flexible, Lightweight and Extensible Neuroimaging Data Processing Framework in Python

Current neuroimaging software offer users an incredible opportunity to analyze their data in different ways, with different underlying assumptions. Several sophisticated software packages (e.g., AFNI, BrainVoyager, FSL, FreeSurfer, Nipy, R, SPM) are used to process and analyze large and often diverse (highly multi-dimensional) data. However, this heterogeneous collection of specialized applicat...

متن کامل

HPMVS: A High Performance Visualization Tool Suite that Assists in Kidney Assessment

This paper introduces an interactive volume visualization tool suite, the High Performance Medical Visualization tool Suite HPMVS . The suite of tools is designed to aid medical staff in the assessment of renal disorders such as those caused by the von Hippel Lindau VHL Syndrome. The tools are useful for image-based evaluation of the severity and progression of disease and for planning and moni...

متن کامل

tipiX: Rapid Visualization of Large Image Collections

We present a novel approach for fast and effective visualization of large image collections in population studies. The key insight is to collapse inherently high-dimensional imaging data onto an interactive two-dimensional canvas native to a computer screen in a way that enables intuitive browsing of the image data. Increasingly, medical image computing research involves exploring large image s...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2014